Ph.D. Theses
PhD5: Daniel Veltri. A Computational and Statistical Framework for Screening Antimicrobial Peptides. Ph.D. Thesis, George Mason University, December, 2015. Committee: Amarda Shehu (chair), Jeffrey Solka, Iosif Vaisman, and Benjamin Matthews.
PhD4: Irina Hashmi. Probabilistic Approaches to Protein-Protein Docking. Ph.D. Thesis, George Mason University, July, 2015. Committee: Amarda Shehu (chair), Kenneth De Jong, Daniel Barbara, Huzefa Rangwala, and Nadine Kabbani.
PhD3: Kevin Molloy. Probabilistic Algorithms for Modeling Protein Structure and Dynamics. Ph.D. Thesis, George Mason University, January, 2015. Committee: Amarda Shehu (chair), Daniel Barbara, Estela Blaisten-Barojas, Jyh-Ming Lien.
PhD2: Brian Olson. Evolving Local Minima in the Protein Energy Surface. Ph.D. Thesis, George Mason University, July, 2013. Committee: Amarda Shehu (chair), Kenneth A De Jong, Estela Blaisten-Barojas, Jana Kosecka, Jyh-Ming Lien.
PhD1: Amarda Shehu. Molecules in Motion: Computing Structural Flexibility. Ph.D. Thesis, Rice University, June, 2008. Committee: Lydia E. Kavraki (chair), Cecilia Clementi, Luay Nakhleh.
M.Sc. Theses
MS7: David Morris. Snapshots and Springs: Analyzing and Reproducing the Motions of Molecules. M.S. Thesis, George Mason University, August 2017. Committee: Amarda Shehu (chair), Zoran Duric, and Kevin Molloy.
MS6: Amr Z. A. Majul. Comparative Molecular Dynamic Simulations of 2 Helical AMPs Found in Snakes ATRA-1 and ATRA-2. M.S. Thesis, George Mason University, July 2015. Committee: Barney Bishop (thesis director), Amarda Shehu (thesis advisor), and Paige Mikell.
MS5: Daniel P. Veltri. Physicochemical Feature Selection for Cathelicidin Antimicrobial Peptides. M.S. Thesis, George Mason University, April 2013. Committee: Amarda Shehu (chair), Iosif Vaisman, Barney Bishop.
MS4: Irina Hashmi. A Probabilistic Search Algorithms for Protein-Protein Docking. M.S. Thesis, George Mason University, November 2012. Committee: Amarda Shehu (chair), Kenneth A. De Jong, and Jyh-Ming Lien.
MS3: Brian Olson.Local Minima Hopping along the Protein Energy Surface. M.S. Thesis, George Mason University, November 2011. Committee: Amarda Shehu (chair), Jana Kosecka, and Jyh-Ming, Lien.
MS2: Kevin Molloy. Variable-Length Fragment Assembly within a Probabilistic Protein Structure Prediction Framework. George Mason University, June 2011. Commitee: Amarda Shehu (chair), Zoran Duric, and Jyh-Ming, Lien.
MS1: Amarda Shehu. Sampling Biomolecular Conformations with Spatial and Geometric Constraints. M.S. Thesis, Rice University, December 2004. Committee: Lydia E. Kavraki (chair), Cecilia Clementi, Ron Goldman, and Luay Nakhleh.